PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G076000.2
Common NameB456_003G076000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 815aa    MW: 89311.7 Da    PI: 5.1378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G076000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000146106481355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R+ i +++ eLr ++P++    +k ls    Le++++Y+  Lq
  Gorai.003G076000.2 610 RQLIQDRIKELRGIIPHN----GKPLSIDHLLEQTIKYLIFLQ 648
                         67799************9....788**************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-71048IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142155.1E-1458150IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.248597647IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MGEAEKGSML KQTLKNLCCS NGWCYGVFWR FDQRNSMLLT MEDAYYEEQM RPLFNSILQK  60
FHILGEGIIG QAAFTGKHRW IFSDSYGKSS NSYTGNQITF QDESELQNQF SCGIKTIAII  120
SLGRQGMVQV GSTQKILERL DFLDETKKIF CGVGSFHGFT PLEIEACNQD DRFAALGSRG  180
NIYNENLATE LYGFPREPKG WPCSLKNATE SSIFMREIRD PSVNSVVQNL PHLRNQLQTS  240
NAEALSLSSG KISPVNCLAA YTPCTSTWRS EGSILTSFET SFPSESGIWD SPNMLPKAND  300
LAVSGNMEQK LQGASTFSSL YGIGELVDAE LPTLDSYGKT AEYQCSFGTN NGLLDDAINL  360
QRITEEFNPA DFTIDLCNSF NLDDLSQLFS PLPRHDINGT GATIISDVSS SVGVTSVSSA  420
LVGEKSTIVH DNGTDLFDGV GIDYAFGKTG ESLEDIIVPL LHGDNSTVTS GLSETISQLD  480
ARAMNGKRKG LFSELGLEKL LDGVNNSSHA TKSSVEDQLS ITKRRKTESS SSSFCQGQFV  540
GLSYSAGSMN PVHHSHTIFN KDIHRKSQVG AWIDDSYSVN GGQAVAATSK KPAKKRAKPG  600
ESTRPRPKDR QLIQDRIKEL RGIIPHNGKP LSIDHLLEQT IKYLIFLQGV TKYADKIKQA  660
DEPKIIGNED GMLPKHNMIS GGATWAFEVG AQSIPIVVKD LNPPGQMLIE MLCEDQGFFL  720
EIANVIRGIG LNILRAVMEL QEDKIWARFI VEAKEQVERT CIIWSLLPLL QQTGGSGIDS  780
ASQPSNDVNG GIPLSNNYLQ PFPLPPLNTA ETFQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012470397.10.0PREDICTED: transcription factor bHLH157-like
TrEMBLA0A0D2QGZ70.0A0A0D2QGZ7_G
STRINGVIT_02s0025g02310.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.17e-48conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]